IL_7OE0_048

3D structure

PDB id

7OE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-30S delta rbfA ribosomal subunit class F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

7OE0|1|A|C|1200, 7OE0|1|A|A|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE0_048 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1326

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7OE0|1|A|G|1057
7OE0|1|A|G|1058
*
7OE0|1|A|U|1199
7OE0|1|A|C|1200
7OE0|1|A|A|1201
7OE0|1|A|U|1202
7OE0|1|A|C|1203

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14