IL_7OE0_060

3D structure

PDB id

7OE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-30S delta rbfA ribosomal subunit class F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE0_060 not in the Motif Atlas

Homologous match to IL_4LFB_061

Geometric discrepancy: 0.2264

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7OE0|1|A|G|1422
7OE0|1|A|G|1423
7OE0|1|A|U|1424
*
7OE0|1|A|A|1476
7OE0|1|A|U|1477
7OE0|1|A|U|1478

Current chains

Chain A

16S rRNA

Nearby chains