IL_7OE1_026

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7OE1|1|A|U|531, 7OE1|1|A|U|534, 7OE1|1|A|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE1_026 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.355

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7OE1|1|A|G|515
7OE1|1|A|U|516
7OE1|1|A|G|517
7OE1|1|A|C|518
7OE1|1|A|C|519
7OE1|1|A|A|520
7OE1|1|A|G|521
*
7OE1|1|A|C|528
7OE1|1|A|G|529
7OE1|1|A|G|530
7OE1|1|A|U|531
7OE1|1|A|A|532
7OE1|1|A|A|533
7OE1|1|A|U|534
7OE1|1|A|A|535
7OE1|1|A|C|536

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12