IL_7OE1_062

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OE1_062 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3587

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OE1|1|A|A|1430
7OE1|1|A|A|1431
7OE1|1|A|G|1432
7OE1|1|A|A|1433
7OE1|1|A|A|1434
7OE1|1|A|G|1435
*
7OE1|1|A|C|1466
7OE1|1|A|C|1467
7OE1|1|A|A|1468
7OE1|1|A|C|1469
7OE1|1|A|U|1470

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20