IL_7OG4_015

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

7OG4|1|AA|C|904, 7OG4|1|AA|C|906

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OG4_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2159

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7OG4|1|AA|G|887
7OG4|1|AA|U|888
7OG4|1|AA|G|889
7OG4|1|AA|C|890
7OG4|1|AA|C|891
7OG4|1|AA|A|892
7OG4|1|AA|G|893
*
7OG4|1|AA|C|900
7OG4|1|AA|G|901
7OG4|1|AA|G|902
7OG4|1|AA|U|903
7OG4|1|AA|C|904
7OG4|1|AA|A|905
7OG4|1|AA|C|906
7OG4|1|AA|A|907
7OG4|1|AA|C|908

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial