IL_7OHQ_039
3D structure
- PDB id
- 7OHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUUUU*AGAACU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHQ_039 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3792
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OHQ|1|1|A|1120
7OHQ|1|1|U|1121
7OHQ|1|1|U|1122
7OHQ|1|1|U|1123
7OHQ|1|1|U|1124
7OHQ|1|1|U|1125
*
7OHQ|1|1|A|1133
7OHQ|1|1|G|1134
7OHQ|1|1|A|1135
7OHQ|1|1|A|1136
7OHQ|1|1|C|1137
7OHQ|1|1|U|1138
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain T
- 60S ribosomal protein L21-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain w
- Regulator of ribosome biosynthesis
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