IL_7OHQ_095

3D structure

PDB id

7OHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7OHQ|1|1|A|3142, 7OHQ|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHQ_095 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2029

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7OHQ|1|1|C|3004
7OHQ|1|1|A|3005
7OHQ|1|1|A|3006
7OHQ|1|1|U|3007
*
7OHQ|1|1|A|3139
7OHQ|1|1|G|3140
7OHQ|1|1|A|3141
7OHQ|1|1|A|3142
7OHQ|1|1|C|3143
7OHQ|1|1|G|3144

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A