3D structure

PDB id
7OHS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
4.38 Å

Loop

Sequence
CUUG*CUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OHS_061 not in the Motif Atlas
Geometric match to IL_5EW4_001
Geometric discrepancy: 0.3521
The information below is about IL_5EW4_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_43644.1
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
2

Unit IDs

7OHS|1|1|C|3235
7OHS|1|1|U|3236
7OHS|1|1|U|3237
7OHS|1|1|G|3238
*
7OHS|1|1|C|3249
7OHS|1|1|U|3250
7OHS|1|1|U|3251
7OHS|1|1|G|3252

Current chains

Chain 1
25S rRNA

Nearby chains

Chain M
60S ribosomal protein L14-A
Chain O
60S ribosomal protein L16-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2389 s