IL_7OHT_024
3D structure
- PDB id
- 7OHT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GAGC*GUUACC
- Length
- 10 nucleotides
- Bulged bases
- 7OHT|1|1|A|2808
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHT_024 not in the Motif Atlas
- Geometric match to IL_8ID2_001
- Geometric discrepancy: 0.3726
- The information below is about IL_8ID2_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7OHT|1|1|G|2412
7OHT|1|1|A|2413
7OHT|1|1|G|2414
7OHT|1|1|C|2415
*
7OHT|1|1|G|2805
7OHT|1|1|U|2806
7OHT|1|1|U|2807
7OHT|1|1|A|2808
7OHT|1|1|C|2809
7OHT|1|1|C|2810
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
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