IL_7OHT_046
3D structure
- PDB id
- 7OHT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCC*GUGG
- Length
- 7 nucleotides
- Bulged bases
- 7OHT|1|1|U|3198
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHT_046 not in the Motif Atlas
- Geometric match to IL_5F5F_001
- Geometric discrepancy: 0.241
- The information below is about IL_5F5F_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
7OHT|1|1|U|3192
7OHT|1|1|C|3193
7OHT|1|1|C|3194
*
7OHT|1|1|G|3197
7OHT|1|1|U|3198
7OHT|1|1|G|3199
7OHT|1|1|G|3200
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
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