IL_7OHU_010

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_010 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.138

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7OHU|1|1|G|272
7OHU|1|1|A|273
7OHU|1|1|G|274
*
7OHU|1|1|C|291
7OHU|1|1|U|292
7OHU|1|1|C|293

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A