IL_7OHU_019

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUC*GCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_019 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.2872

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7OHU|1|1|C|667
7OHU|1|1|G|668
7OHU|1|1|U|669
7OHU|1|1|C|670
*
7OHU|1|1|G|792
7OHU|1|1|C|793
7OHU|1|1|U|794
7OHU|1|1|G|795

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Q

60S ribosomal protein L18-A