IL_7OHU_046

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCAAG*CGACAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_046 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.3877

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OHU|1|1|G|2834
7OHU|1|1|U|2835
7OHU|1|1|C|2836
7OHU|1|1|A|2837
7OHU|1|1|A|2838
7OHU|1|1|G|2839
*
7OHU|1|1|C|2849
7OHU|1|1|G|2850
7OHU|1|1|A|2851
7OHU|1|1|C|2852
7OHU|1|1|A|2853
7OHU|1|1|U|2854

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2