IL_7OHU_074

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAG*UUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_074 not in the Motif Atlas

Geometric match to IL_6CZR_169

Geometric discrepancy: 0.3816

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

7OHU|1|1|G|3345
7OHU|1|1|U|3346
7OHU|1|1|A|3347
7OHU|1|1|G|3348
*
7OHU|1|1|U|3357
7OHU|1|1|U|3358
7OHU|1|1|A|3359
7OHU|1|1|C|3360

Current chains

Chain 1

25S rRNA

Nearby chains