IL_7OHU_077

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

7OHU|1|1|G|2393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHU_077 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2712

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7OHU|1|1|G|2391
7OHU|1|1|C|2392
7OHU|1|1|G|2393
7OHU|1|1|G|2394
*
7OHU|1|1|U|2986
7OHU|1|1|A|2987
7OHU|1|1|C|2988

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A