IL_7OHV_044

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_044 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1518

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7OHV|1|1|G|1444
7OHV|1|1|U|1445
7OHV|1|1|A|1446
7OHV|1|1|G|1447
7OHV|1|1|U|1448
7OHV|1|1|A|1449
7OHV|1|1|G|1450
*
7OHV|1|1|C|2354
7OHV|1|1|G|2355
7OHV|1|1|A|2356
7OHV|1|1|A|2357
7OHV|1|1|A|2358
7OHV|1|1|C|2359

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain P

60S ribosomal protein L17-A