IL_7OHV_080

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHV_080 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2245

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7OHV|1|1|U|3300
7OHV|1|1|U|3301
7OHV|1|1|U|3302
7OHV|1|1|G|3303
*
7OHV|1|1|C|3311
7OHV|1|1|U|3312
7OHV|1|1|U|3313
7OHV|1|1|A|3314

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A