IL_7OHW_010
3D structure
- PDB id
- 7OHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUU*AGUGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHW_010 not in the Motif Atlas
- Geometric match to IL_5U3G_002
- Geometric discrepancy: 0.3839
- The information below is about IL_5U3G_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_22373.1
- Basepair signature
- cWW-L-R-cSH-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OHW|1|1|G|176
7OHW|1|1|U|177
7OHW|1|1|U|178
*
7OHW|1|1|A|238
7OHW|1|1|G|239
7OHW|1|1|U|240
7OHW|1|1|G|241
7OHW|1|1|C|242
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
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