IL_7OHW_042
3D structure
- PDB id
- 7OHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 7OHW|1|1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHW_042 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.2105
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
7OHW|1|1|U|1388
7OHW|1|1|G|1389
7OHW|1|1|A|1390
7OHW|1|1|C|1391
7OHW|1|1|G|1392
7OHW|1|1|A|1393
7OHW|1|1|A|1394
7OHW|1|1|G|1395
*
7OHW|1|1|U|1415
7OHW|1|1|C|1416
7OHW|1|1|G|1417
7OHW|1|1|A|1418
7OHW|1|1|A|1419
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 3
- Protein MAK16
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
- Chain x
- Ribosome production factor 1
Coloring options: