IL_7OHW_059

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

7OHW|1|1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OHW_059 not in the Motif Atlas

Geometric match to IL_4ZT0_004

Geometric discrepancy: 0.3658

The information below is about IL_4ZT0_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OHW|1|1|G|3318
7OHW|1|1|U|3319
7OHW|1|1|A|3320
*
7OHW|1|1|U|3387
7OHW|1|1|C|3388

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3