IL_7OHY_080
3D structure
- PDB id
- 7OHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 7OHY|1|2|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OHY_080 not in the Motif Atlas
- Homologous match to IL_8P9A_371
- Geometric discrepancy: 0.1923
- The information below is about IL_8P9A_371
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7OHY|1|2|U|64
7OHY|1|2|A|65
7OHY|1|2|A|66
*
7OHY|1|2|U|93
7OHY|1|2|C|94
7OHY|1|2|G|95
7OHY|1|2|A|96
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
Coloring options: