3D structure

PDB id
7OI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli delta rbfA pre-30S ribosomal subunit class D
Experimental method
ELECTRON MICROSCOPY
Resolution
2.76 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
7OI0|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OI0_032 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0799
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

7OI0|1|A|U|605
7OI0|1|A|G|606
7OI0|1|A|A|607
7OI0|1|A|A|608
7OI0|1|A|A|609
7OI0|1|A|U|610
7OI0|1|A|C|611
7OI0|1|A|C|612
*
7OI0|1|A|G|628
7OI0|1|A|A|629
7OI0|1|A|A|630
7OI0|1|A|C|631
7OI0|1|A|U|632
7OI0|1|A|G|633

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain H
30S ribosomal protein S8
Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:


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