IL_7OID_052

3D structure

PDB id

7OID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

7OID|1|A|G|1453

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OID_052 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3508

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7OID|1|A|C|1449
7OID|1|A|C|1450
7OID|1|A|C|1451
7OID|1|A|U|1452
7OID|1|A|G|1453
7OID|1|A|U|1454
7OID|1|A|A|1455
7OID|1|A|C|1456
*
7OID|1|A|G|1461
7OID|1|A|G|1462
7OID|1|A|A|1463
7OID|1|A|C|1464
7OID|1|A|A|1465
7OID|1|A|A|1466
7OID|1|A|G|1467

Current chains

Chain A

16S rRNA

Nearby chains

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1