IL_7OIF_035

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7OIF|1|1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIF_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0686

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7OIF|1|1|U|1018
7OIF|1|1|U|1019
7OIF|1|1|A|1020
7OIF|1|1|A|1021
7OIF|1|1|G|1022
7OIF|1|1|U|1023
7OIF|1|1|G|1024
*
7OIF|1|1|C|1140
7OIF|1|1|U|1141
7OIF|1|1|A|1142
7OIF|1|1|A|1143
7OIF|1|1|A|1144

Current chains

Chain 1

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L13

Chain e

50S ribosomal protein L36