IL_7OIG_175

3D structure

PDB id

7OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OIG_175 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.0932

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

7OIG|1|2|A|1430
7OIG|1|2|A|1431
7OIG|1|2|G|1432
7OIG|1|2|A|1433
7OIG|1|2|A|1434
7OIG|1|2|G|1435
*
7OIG|1|2|C|1466
7OIG|1|2|C|1467
7OIG|1|2|A|1468
7OIG|1|2|C|1469
7OIG|1|2|U|1470

Current chains

Chain 2

16S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain O

50S ribosomal protein L19

Chain x

30S ribosomal protein S20