IL_7OII_135

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7OII|1|2|A|532, 7OII|1|2|U|534, 7OII|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OII_135 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3341

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7OII|1|2|G|515
7OII|1|2|PSU|516
7OII|1|2|G|517
7OII|1|2|C|518
7OII|1|2|C|519
7OII|1|2|A|520
7OII|1|2|G|521
*
7OII|1|2|C|528
7OII|1|2|G|529
7OII|1|2|G|530
7OII|1|2|U|531
7OII|1|2|A|532
7OII|1|2|A|533
7OII|1|2|U|534
7OII|1|2|A|535
7OII|1|2|C|536

Current chains

Chain 2

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12