3D structure

PDB id
7OII (explore in PDB, NAKB, or RNA 3D Hub)
Description
CspA-70 cotranslational folding intermediate 2
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAAG*CGGACC
Length
10 nucleotides
Bulged bases
7OII|1|2|A|1257, 7OII|1|2|A|1280, 7OII|1|2|C|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OII_165 not in the Motif Atlas
Homologous match to IL_5J7L_055
Geometric discrepancy: 0.1258
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

7OII|1|2|G|1255
7OII|1|2|A|1256
7OII|1|2|A|1257
7OII|1|2|G|1258
*
7OII|1|2|C|1277
7OII|1|2|G|1278
7OII|1|2|G|1279
7OII|1|2|A|1280
7OII|1|2|C|1281
7OII|1|2|C|1282

Current chains

Chain 2
16S rRNA

Nearby chains

Chain g
30S ribosomal protein S3
Chain n
30S ribosomal protein S10
Chain r
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1284 s