IL_7OJ0_013
3D structure
- PDB id
- 7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 7OJ0|1|A|U|244, 7OJ0|1|A|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OJ0_013 not in the Motif Atlas
- Geometric match to IL_4V88_402
- Geometric discrepancy: 0.1685
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7OJ0|1|A|G|242
7OJ0|1|A|A|243
7OJ0|1|A|U|244
7OJ0|1|A|U|245
7OJ0|1|A|A|246
7OJ0|1|A|G|247
*
7OJ0|1|A|C|277
7OJ0|1|A|G|278
7OJ0|1|A|A|279
7OJ0|1|A|C|280
7OJ0|1|A|G|281
7OJ0|1|A|A|282
7OJ0|1|A|U|283
7OJ0|1|A|C|284
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
Coloring options: