IL_7OJ0_161

3D structure

PDB id

7OJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

7OJ0|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OJ0_161 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0691

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7OJ0|1|a|C|2636
7OJ0|1|a|U|2637
7OJ0|1|a|G|2638
7OJ0|1|a|A|2639
7OJ0|1|a|G|2640
*
7OJ0|1|a|C|2774
7OJ0|1|a|G|2775
7OJ0|1|a|A|2776
7OJ0|1|a|G|2777
7OJ0|1|a|A|2778
7OJ0|1|a|U|2779
7OJ0|1|a|G|2780
7OJ0|1|a|A|2781
7OJ0|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13