IL_7OLC_046

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUCG*CAUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_046 not in the Motif Atlas

Geometric match to IL_5TBW_065

Geometric discrepancy: 0.3241

The information below is about IL_5TBW_065

Detailed Annotation

Multiple bulged bases with near cWW

Broad Annotation

Multiple bulged bases with near cWW

Motif group

IL_58686.2

Basepair signature

cWW-cWW-L-R-cSH-cWW

Number of instances in this motif group

6

Unit IDs

7OLC|1|1|G|994
7OLC|1|1|A|995
7OLC|1|1|C|996
7OLC|1|1|U|997
7OLC|1|1|C|998
7OLC|1|1|G|999
*
7OLC|1|1|C|1018
7OLC|1|1|A|1019
7OLC|1|1|U|1020
7OLC|1|1|C|1021

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein

Chain LI

60S ribosomal protein L10-like protein