IL_7OLC_136

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GUAAGC

Length

9 nucleotides

Bulged bases

7OLC|1|1|G|3318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_136 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1142

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7OLC|1|1|G|3269
7OLC|1|1|U|3270
7OLC|1|1|C|3271
*
7OLC|1|1|G|3314
7OLC|1|1|U|3315
7OLC|1|1|A|3316
7OLC|1|1|A|3317
7OLC|1|1|G|3318
7OLC|1|1|C|3319

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LW

60S ribosomal protein L24-like protein

Chain Ld

Putative 60S ribosomal protein