IL_7OLC_163

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

7OLC|1|2|G|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_163 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1121

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7OLC|1|2|C|440
7OLC|1|2|C|441
7OLC|1|2|A|442
7OLC|1|2|A|443
7OLC|1|2|U|444
7OLC|1|2|C|445
*
7OLC|1|2|G|455
7OLC|1|2|G|456
7OLC|1|2|A|457
7OLC|1|2|G|458

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SY

40S ribosomal protein S24