IL_7OLC_183

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUC*GGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_183 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.1079

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7OLC|1|2|A|869
7OLC|1|2|G|870
7OLC|1|2|U|871
7OLC|1|2|C|872
*
7OLC|1|2|G|951
7OLC|1|2|G|952
7OLC|1|2|A|953
7OLC|1|2|U|954

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S1

Chain SN

40S ribosomal protein S13-like protein

Chain Sb

Ribosomal protein s27-like protein