IL_7OLC_289

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

7OLC|1|2|C|1155, 7OLC|1|2|C|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLC_289 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3616

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7OLC|1|2|C|1153
7OLC|1|2|A|1154
7OLC|1|2|C|1155
7OLC|1|2|C|1156
7OLC|1|2|A|1157
*
7OLC|1|2|U|1613
7OLC|1|2|C|1614
7OLC|1|2|C|1615
7OLC|1|2|C|1616
7OLC|1|2|U|1617
7OLC|1|2|G|1618

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain Sc

40S ribosomal protein S28-like protein