IL_7OLC_290
3D structure
- PDB id
- 7OLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at idle POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCU*GCGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLC_290 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2562
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7OLC|1|2|G|1169
7OLC|1|2|C|1170
7OLC|1|2|C|1171
7OLC|1|2|U|1172
*
7OLC|1|2|G|1460
7OLC|1|2|C|1461
7OLC|1|2|G|1462
7OLC|1|2|C|1463
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain SS
- Putative ribosomal protein
- Chain ST
- 40S ribosomal protein S19-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
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