IL_7OLD_042
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_042 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1398
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OLD|1|1|G|973
7OLD|1|1|A|974
7OLD|1|1|G|975
7OLD|1|1|G|976
7OLD|1|1|U|977
7OLD|1|1|A|978
7OLD|1|1|A|979
*
7OLD|1|1|U|1035
7OLD|1|1|A|1036
7OLD|1|1|A|1037
7OLD|1|1|A|1038
7OLD|1|1|U|1039
7OLD|1|1|A|1040
7OLD|1|1|U|1041
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LI
- 60S ribosomal protein L10-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
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