IL_7OLD_058
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 7OLD|1|1|U|1204
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_058 not in the Motif Atlas
- Homologous match to IL_8C3A_057
- Geometric discrepancy: 0.2237
- The information below is about IL_8C3A_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7OLD|1|1|U|1201
7OLD|1|1|C|1202
7OLD|1|1|U|1203
7OLD|1|1|U|1204
7OLD|1|1|G|1205
7OLD|1|1|A|1206
7OLD|1|1|C|1207
7OLD|1|1|A|1208
7OLD|1|1|G|1209
*
7OLD|1|1|C|1266
7OLD|1|1|C|1267
7OLD|1|1|G|1268
7OLD|1|1|A|1269
7OLD|1|1|A|1270
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LS
- 60S ribosomal protein L20
- Chain Lm
- Ubiquitin
- Chain Ls
- 60S acidic ribosomal protein P0
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