IL_7OLD_127
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_127 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1199
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7OLD|1|1|C|2976
7OLD|1|1|U|2977
7OLD|1|1|U|2978
7OLD|1|1|A|2979
7OLD|1|1|G|2980
7OLD|1|1|U|2981
7OLD|1|1|A|2982
7OLD|1|1|C|2983
*
7OLD|1|1|G|2988
7OLD|1|1|G|2989
7OLD|1|1|A|2990
7OLD|1|1|A|2991
7OLD|1|1|C|2992
7OLD|1|1|C|2993
7OLD|1|1|G|2994
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain C
- Elongation factor 2
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
- Chain Lm
- Ubiquitin
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