IL_7OLD_128

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

7OLD|1|1|C|3050

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_128 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1767

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7OLD|1|1|U|3005
7OLD|1|1|A|3006
7OLD|1|1|A|3007
7OLD|1|1|U|3008
7OLD|1|1|U|3009
*
7OLD|1|1|A|3049
7OLD|1|1|C|3050
7OLD|1|1|C|3051
7OLD|1|1|A|3052

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LV

60S ribosomal protein l23-like protein

Chain LW

60S ribosomal protein L24-like protein