IL_7OLD_135
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAAGAAUAGG*CUCGUA
- Length
- 16 nucleotides
- Bulged bases
- 7OLD|1|1|A|3134, 7OLD|1|1|A|3140, 7OLD|1|1|C|3152, 7OLD|1|1|U|3154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_135 not in the Motif Atlas
- Geometric match to IL_8C3A_132
- Geometric discrepancy: 0.3958
- The information below is about IL_8C3A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|1|U|3133
7OLD|1|1|A|3134
7OLD|1|1|A|3135
7OLD|1|1|G|3136
7OLD|1|1|A|3137
7OLD|1|1|A|3138
7OLD|1|1|U|3139
7OLD|1|1|A|3140
7OLD|1|1|G|3141
7OLD|1|1|G|3142
*
7OLD|1|1|C|3150
7OLD|1|1|U|3151
7OLD|1|1|C|3152
7OLD|1|1|G|3153
7OLD|1|1|U|3154
7OLD|1|1|A|3155
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L6
- Chain LH
- 60S ribosomal protein l9-like protein
- Chain LM
- 60S ribosomal protein L14-like protein
- Chain LO
- 60S ribosomal protein L16-like protein
- Chain LS
- 60S ribosomal protein L20
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