IL_7OLD_176
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7OLD|1|2|A|576, 7OLD|1|2|U|578, 7OLD|1|2|U|579
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_176 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1384
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OLD|1|2|G|559
7OLD|1|2|U|560
7OLD|1|2|G|561
7OLD|1|2|C|562
7OLD|1|2|C|563
7OLD|1|2|A|564
7OLD|1|2|G|565
*
7OLD|1|2|C|572
7OLD|1|2|G|573
7OLD|1|2|G|574
7OLD|1|2|U|575
7OLD|1|2|A|576
7OLD|1|2|A|577
7OLD|1|2|U|578
7OLD|1|2|U|579
7OLD|1|2|C|580
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- HABP4_PAI-RBP1 domain-containing protein
- Chain C
- Elongation factor 2
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Se
- 40S ribosomal protein S30
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