IL_7OLD_177

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7OLD|1|2|A|616, 7OLD|1|2|A|617, 7OLD|1|2|A|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_177 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1757

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7OLD|1|2|G|613
7OLD|1|2|U|614
7OLD|1|2|U|615
7OLD|1|2|A|616
7OLD|1|2|A|617
7OLD|1|2|A|618
7OLD|1|2|A|619
*
7OLD|1|2|U|1101
7OLD|1|2|C|1102

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein s23-like protein

Chain Sa

40S ribosomal protein S26