IL_7OLD_179
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUAG*UCAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_179 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.1992
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
7OLD|1|2|C|624
7OLD|1|2|G|625
7OLD|1|2|U|626
7OLD|1|2|A|627
7OLD|1|2|G|628
*
7OLD|1|2|U|966
7OLD|1|2|C|967
7OLD|1|2|A|968
7OLD|1|2|G|969
7OLD|1|2|G|970
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SN
- 40S ribosomal protein S13-like protein
- Chain SW
- 40S ribosomal protein S22-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
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