IL_7OLD_210

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

7OLD|1|2|U|1428, 7OLD|1|2|G|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OLD_210 not in the Motif Atlas

Geometric match to IL_4V88_451

Geometric discrepancy: 0.1765

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7OLD|1|2|U|1273
7OLD|1|2|G|1274
7OLD|1|2|G|1275
*
7OLD|1|2|U|1426
7OLD|1|2|C|1427
7OLD|1|2|U|1428
7OLD|1|2|G|1429
7OLD|1|2|U|1430
7OLD|1|2|G|1431
7OLD|1|2|A|1432

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

HABP4_PAI-RBP1 domain-containing protein

Chain SD

40S ribosomal protein S3-like protein

Chain SK

40S ribosomal protein s10-like protein

Chain SU

40S ribosomal protein S20-like protein

Chain Sd

Ribosomal protein uS14

Chain Sf

40S ribosomal protein S27a-like protein