IL_7OLD_225
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_225 not in the Motif Atlas
- Geometric match to IL_4LFB_029
- Geometric discrepancy: 0.3506
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
7OLD|1|2|C|1640
7OLD|1|2|G|1641
7OLD|1|2|C|1642
7OLD|1|2|U|1643
*
7OLD|1|2|A|1749
7OLD|1|2|A|1750
7OLD|1|2|A|1751
7OLD|1|2|A|1752
7OLD|1|2|G|1753
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- Elongation factor 2
- Chain Ln
- 60S ribosomal protein L41-A
- Chain SX
- 40S ribosomal protein s23-like protein
- Chain Se
- 40S ribosomal protein S30
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