IL_7OLD_262
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAUCAA*UGACAACG
- Length
- 14 nucleotides
- Bulged bases
- 7OLD|1|2|U|310, 7OLD|1|2|C|348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_262 not in the Motif Atlas
- Homologous match to IL_8C3A_410
- Geometric discrepancy: 0.1347
- The information below is about IL_8C3A_410
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.1
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7OLD|1|2|U|308
7OLD|1|2|A|309
7OLD|1|2|U|310
7OLD|1|2|C|311
7OLD|1|2|A|312
7OLD|1|2|A|313
*
7OLD|1|2|U|345
7OLD|1|2|G|346
7OLD|1|2|A|347
7OLD|1|2|C|348
7OLD|1|2|A|349
7OLD|1|2|A|350
7OLD|1|2|C|351
7OLD|1|2|G|352
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11-like protein
- Chain SX
- 40S ribosomal protein s23-like protein
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