IL_7OLD_265
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CACCA*UCCCUG
- Length
- 11 nucleotides
- Bulged bases
- 7OLD|1|2|C|1155, 7OLD|1|2|C|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_265 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3859
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
7OLD|1|2|C|1153
7OLD|1|2|A|1154
7OLD|1|2|C|1155
7OLD|1|2|C|1156
7OLD|1|2|A|1157
*
7OLD|1|2|U|1613
7OLD|1|2|C|1614
7OLD|1|2|C|1615
7OLD|1|2|C|1616
7OLD|1|2|U|1617
7OLD|1|2|G|1618
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain Sc
- 40S ribosomal protein S28-like protein
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