IL_7OLD_266
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7OLD|1|2|C|1271, 7OLD|1|2|U|1428, 7OLD|1|2|G|1431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_266 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1103
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|2|U|1269
7OLD|1|2|G|1270
7OLD|1|2|C|1271
7OLD|1|2|A|1272
7OLD|1|2|U|1273
7OLD|1|2|G|1274
7OLD|1|2|G|1275
*
7OLD|1|2|U|1426
7OLD|1|2|C|1427
7OLD|1|2|U|1428
7OLD|1|2|G|1429
7OLD|1|2|U|1430
7OLD|1|2|G|1431
7OLD|1|2|A|1432
7OLD|1|2|U|1433
7OLD|1|2|G|1434
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain B
- HABP4_PAI-RBP1 domain-containing protein
- Chain C
- Elongation factor 2
- Chain SD
- 40S ribosomal protein S3-like protein
- Chain SK
- 40S ribosomal protein s10-like protein
- Chain SU
- 40S ribosomal protein S20-like protein
- Chain Sd
- Ribosomal protein uS14
- Chain Sf
- 40S ribosomal protein S27a-like protein
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