IL_7OLD_269
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUAAGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- 7OLD|1|4|U|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OLD_269 not in the Motif Atlas
- Homologous match to IL_8C3A_150
- Geometric discrepancy: 0.135
- The information below is about IL_8C3A_150
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|4|A|44
7OLD|1|4|C|45
7OLD|1|4|G|46
7OLD|1|4|C|47
7OLD|1|4|A|48
7OLD|1|4|G|49
7OLD|1|4|C|50
7OLD|1|4|G|51
7OLD|1|4|A|52
7OLD|1|4|A|53
7OLD|1|4|A|54
7OLD|1|4|U|55
7OLD|1|4|G|56
7OLD|1|4|C|57
7OLD|1|4|G|58
7OLD|1|4|A|59
7OLD|1|4|U|60
7OLD|1|4|A|61
7OLD|1|4|A|62
7OLD|1|4|G|63
7OLD|1|4|U|64
*
7OLD|1|4|A|96
7OLD|1|4|A|97
7OLD|1|4|U|98
7OLD|1|4|C|99
7OLD|1|4|U|100
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- Dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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