IL_7OOD_002
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OOD_002 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.1396
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
7OOD|1|3|G|26
7OOD|1|3|U|27
7OOD|1|3|G|28
7OOD|1|3|G|29
7OOD|1|3|A|30
7OOD|1|3|U|31
7OOD|1|3|G|32
*
7OOD|1|3|C|545
7OOD|1|3|U|546
7OOD|1|3|G|547
7OOD|1|3|A|548
7OOD|1|3|A|549
7OOD|1|3|A|550
7OOD|1|3|C|551
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
Coloring options: